Upgrade from MySQL 5.7 to MariaDB 11.4.2 leads to crash

2024-08-05 16:12:40 0 [Note] Starting MariaDB 11.4.2-MariaDB-log source revision 3fca5ed772fb75e3e57c507edef2985f8eba5b12 as process 504543

2024-08-05 16:12:40 0 [Note] InnoDB: Compressed tables use zlib 1.3.1

2024-08-05 16:12:40 0 [Note] InnoDB: Number of transaction pools: 1

2024-08-05 16:12:40 0 [Note] InnoDB: Using crc32 + pclmulqdq instructions

2024-08-05 16:12:40 0 [Note] InnoDB: Using Linux native AIO

2024-08-05 16:12:40 0 [Note] InnoDB: Initializing buffer pool, total size = 128.000MiB, chunk size = 2.000MiB

2024-08-05 16:12:40 0 [Note] InnoDB: Completed initialization of buffer pool

2024-08-05 16:12:40 0 [Note] InnoDB: Buffered log writes (block size=512 bytes)

2024-08-05 16:12:40 0 [Note] InnoDB: Upgrading redo log: 256.000MiB; LSN=39606720606

2024-08-05 16:12:40 0 [Note] InnoDB: Buffered log writes (block size=512 bytes)

2024-08-05 16:12:40 0 [Note] InnoDB: Upgrading the change buffer

2024-08-05 16:12:42 0 [Note] InnoDB: Upgraded the change buffer: 0 tablespaces, 0 pages

2024-08-05 16:12:42 0 [Note] InnoDB: Reinitializing innodb_undo_tablespaces= 3 from 0

2024-08-05 16:12:42 0 [Note] InnoDB: Data file .//undo001 did not exist: new to be created

2024-08-05 16:12:42 0 [Note] InnoDB: Setting file .//undo001 size to 10.000MiB

2024-08-05 16:12:42 0 [Note] InnoDB: Database physically writes the file full: wait...

2024-08-05 16:12:42 0 [Note] InnoDB: Data file .//undo002 did not exist: new to be created

2024-08-05 16:12:42 0 [Note] InnoDB: Setting file .//undo002 size to 10.000MiB

2024-08-05 16:12:42 0 [Note] InnoDB: Database physically writes the file full: wait...

2024-08-05 16:12:42 0 [Note] InnoDB: Data file .//undo003 did not exist: new to be created

2024-08-05 16:12:42 0 [Note] InnoDB: Setting file .//undo003 size to 10.000MiB

2024-08-05 16:12:42 0 [Note] InnoDB: Database physically writes the file full: wait...

2024-08-05 16:12:42 0 [Note] InnoDB: 128 rollback segments in 3 undo tablespaces are active.

2024-08-05 16:12:42 0 [Note] InnoDB: Setting file './ibtmp1' size to 12.000MiB. Physically writing the file full; Please wait ...

2024-08-05 16:12:42 0 [Note] InnoDB: File './ibtmp1' size is now 12.000MiB.

2024-08-05 16:12:42 0 [Note] InnoDB: log sequence number 39606720606; transaction id 28108546

2024-08-05 16:12:42 0 [Note] InnoDB: Loading buffer pool(s) from /home/mysql/database/mariadb-114/data/ib_buffer_pool

2024-08-05 16:12:42 0 [Note] Plugin 'FEEDBACK' is disabled.

2024-08-05 16:12:42 0 [Note] Plugin 'wsrep-provider' is disabled.

2024-08-05 16:12:42 0 [Note] Recovering after a crash using /home/mysql/database/mariadb-114/binlog/chef_mariadb-114_binlog

2024-08-05 16:12:42 0 [Note] Starting table crash recovery...

2024-08-05 16:12:42 0 [Note] Crash table recovery finished.

2024-08-05 16:12:42 1 [Warning] Failed to load slave replication state from table mysql.gtid_slave_pos: 1146: Table 'mysql.gtid_slave_pos' doesn't exist

2024-08-05 16:12:42 0 [Note] InnoDB: Buffer pool(s) load completed at 240805 16:12:42

2024-08-05 16:12:44 0 [Note] Server socket created on IP: '0.0.0.0'.

2024-08-05 16:12:44 0 [Note] Server socket created on IP: '::'.

2024-08-05 16:12:44 0 [ERROR] Missing system table mysql.roles_mapping; please run mysql_upgrade to create it

2024-08-05 16:12:44 0 [ERROR] Incorrect definition of table mysql.event: expected column 'definer' at position 3 to have type varchar(, found type char(93).

2024-08-05 16:12:44 0 [ERROR] Incorrect definition of table mysql.event: expected column 'sql_mode' at position 14 to have type set('REAL_AS_FLOAT','PIPES_AS_CONCAT','ANSI_QUOTES','IGNORE_SPACE','IGNORE_BAD_TABLE_OPTIONS','ONLY_FULL_GROUP_BY','NO_UNSIGNED_SUBTRACTION','NO_DIR_IN_CREATE','POSTGRESQL','ORACLE','MSSQL','DB2','MAXDB','NO_KEY_OPTIONS','NO_TABLE_OPTIONS','NO_FIELD_OPTIONS','MYSQL323','MYSQL40','ANSI','NO_AUTO_VALUE_ON_ZERO','NO_BACKSLASH_ESCAPES','STRICT_TRANS_TABLES','STRICT_ALL_TABLES','NO_ZERO_IN_DATE','NO_ZERO_DATE','INVALID_DATES','ERROR_FOR_DIVISION_BY_ZERO','TRADITIONAL','NO_AUTO_CREATE_USER','HIGH_NOT_PRECEDENCE','NO_ENGINE_SUBSTITUTION','PAD_CHAR_TO_FULL_LENGTH','EMPTY_STRING_IS_NULL','SIMULTANEOUS_ASSIGNMENT'), found type set('REAL_AS_FLOAT','PIPES_AS_CONCAT','ANSI_QUOTES','IGNORE_SPACE','NOT_USED','ONLY_FULL_GROUP_BY','NO_UNSIGNED_SUBTRACTION','NO_DIR_IN_CREATE','POSTGRESQL','ORACLE','MSSQL','DB2','MAXDB','NO_KEY_OPTIONS','NO_TABLE_OPTIONS','NO_FIELD_OPTIONS','MYSQL323','MYSQL40','ANSI','NO_AUTO_VALUE_ON_ZERO','NO_B

2024-08-05 16:12:44 0 [ERROR] mariadbd: Event Scheduler: An error occurred when initializing system tables. Disabling the Event Scheduler.

2024-08-05 16:12:44 2 [Warning] Failed to load slave replication state from table mysql.gtid_slave_pos: 1146: Table 'mysql.gtid_slave_pos' doesn't exist

2024-08-05 16:12:44 0 [Note] bin/mariadbd: ready for connections.

Version: '11.4.2-MariaDB-log'  socket: '/run/mariadb/mariadb-3358.sock'  port: 3358  MariaDB Server

2024-08-05 16:12:45 4 [Warning] Aborted connection 4 to db: 'unconnected' user: 'unauthenticated' host: 'localhost' (This connection closed normally without authentication)

2024-08-05 16:13:11 13 [Note] mariadbd: Event Scheduler: Loaded 0 events

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 32 on table `crm`.`campaign_trkrs` (created with version 50744)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 31 on table `crm`.`campaigns` (created with version 50744)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 1 on table `crm`.`cases` (created with version 50744)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 8985 on table `crm`.`prospects` (created with version 50744)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 35442 on table `crm`.`tracker` (created with version 50744)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 1526 on table `test`.`employee` (created with version 50741)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 1 on table `test`.`jsonptntest#P#p_2021` (created with version 50741)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 2 on table `test`.`jsonptntest#P#p_2022` (created with version 50741)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 3 on table `test`.`jsonptntest#P#p_2023` (created with version 50741)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 1310693 on table `test`.`t1` (created with version 50744)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 1048576 on table `test`.`t2` (created with version 50744)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 1048576 on table `test`.`t3` (created with version 50744)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 10 on table `test`.`team` (created with version 50741)

2024-08-05 16:13:21 16 [Note] InnoDB: Resetting PAGE_ROOT_AUTO_INC from 0 to 2424796 on table `test`.`test` (created with version 50741)

2024-08-05 16:13:36 26 [ERROR] mariadbd: Table rebuild required. Please do "ALTER TABLE `test.jsonptntest` FORCE" or dump/reload to fix it!

240805 16:13:51 [ERROR] mysqld got signal 11 ;

Sorry, we probably made a mistake, and this is a bug.

Your assistance in bug reporting will enable us to fix this for the next release.

To report this bug, see https://mariadb.com/kb/en/reporting-bugs

We will try our best to scrape up some info that will hopefully help

diagnose the problem, but since we have already crashed, 

something is definitely wrong and this may fail.

Server version: 11.4.2-MariaDB-log source revision: 3fca5ed772fb75e3e57c507edef2985f8eba5b12

key_buffer_size=8388608

read_buffer_size=131072

max_used_connections=1

max_threads=153

thread_count=1

It is possible that mysqld could use up to 

key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 345186 K  bytes of memory

Hope that's ok; if not, decrease some variables in the equation.

Thread pointer: 0x7fb8b8000c68

Attempting backtrace. You can use the following information to find out

where mysqld died. If you see no messages after this, something went

terribly wrong...

stack_bottom = 0x7fb8f811bc80 thread_stack 0x49000

addr2line: 'bin/mariadbd': No such file

Printing to addr2line failed

bin/mariadbd(my_print_stacktrace+0x2e)[0x5a9492ae04e]

bin/mariadbd(handle_fatal_signal+0x2f7)[0x55a948cf1f47]

libc_sigaction.c:0(__restore_rt)[0x7fb90e7ac520]

addr2line: 'bin/mariadbd': No such file

bin/mariadbd(_Z8closefrmP5TABLE+0xa0)[0x55a948b733d0]

bin/mariadbd(+0xa6cb76)[0x55a948c6cb76]

bin/mariadbd(_Z19close_thread_tablesP3THD+0x1db)[0x55a948a2357b]

bin/mariadbd(+0x9bcf73)[0x55a948bbcf73]

bin/mariadbd(_ZN19Sql_cmd_check_table7executeEP3THD+0xae)[0x55a948bbe98e]

bin/mariadbd(_Z21mysql_execute_commandP3THDb+0x1bac)[0x55a948a988ac]

bin/mariadbd(_Z11mysql_parseP3THDPcjP12Parser_state+0x20b)[0x55a948a9bbbb]

bin/mariadbd(_Z16dispatch_command19enum_server_commandP3THDPcjb+0x1654)[0x55a948a9e1b4]

bin/mariadbd(_Z10do_commandP3THDb+0x123)[0x55a948a9f5f3]

bin/mariadbd(_Z24do_handle_one_connectionP7CONNECTb+0x187)[0x55a948bafa37]

bin/mariadbd(handle_one_connection+0x34)[0x55a948bafcd4]

bin/mariadbd(+0xd48f4c)[0x55a948f48f4c]

nptl/pthread_create.c:442(start_thread)[0x7fb90e7feac3]

x86_64/clone3.S:83(__clone3)[0x7fb90e890850]

Trying to get some variables.

Some pointers may be invalid and cause the dump to abort.

Query (0x7fb8b801bb50): CHECK TABLE `jsonptntest`  FOR UPGRADE

Connection ID (thread ID): 30

Status: NOT_KILLED

Optimizer switch: index_merge=on,index_merge_union=on,index_merge_sort_union=on,index_merge_intersection=on,index_merge_sort_intersection=off,index_condition_pushdown=on,derived_merge=on,derived_with_keys=on,firstmatch=on,loosescan=on,materialization=on,in_to_exists=on,semijoin=on,partial_match_rowid_merge=on,partial_match_table_scan=on,subquery_cache=on,mrr=off,mrr_cost_based=off,mrr_sort_keys=off,outer_join_with_cache=on,semijoin_with_cache=on,join_cache_incremental=on,join_cache_hashed=on,join_cache_bka=on,optimize_join_buffer_size=on,table_elimination=on,extended_keys=on,exists_to_in=on,orderby_uses_equalities=on,condition_pushdown_for_derived=on,split_materialized=on,condition_pushdown_for_subquery=on,rowid_filter=on,condition_pushdown_from_having=on,not_null_range_scan=off,hash_join_cardinality=on,cset_narrowing=off,sargable_casefold=on

The manual page at https://mariadb.com/kb/en/how-to-produce-a-full-stack-trace-for-mariadbd/ contains

information that should help you find out what is causing the crash.

Writing a core file...

Working directory at /home/mysql/database/mariadb-114/data

Resource Limits:

Limit                     Soft Limit           Hard Limit           Units     

Max cpu time              unlimited            unlimited            seconds   

Max file size             unlimited            unlimited            bytes     

Max data size             unlimited            unlimited            bytes     

Max stack size            8388608              unlimited            bytes     

Max core file size        0                    0                    bytes     

Max resident set          unlimited            unlimited            bytes     

Max processes             62207                62207                processes 

Max open files            64186                64186                files     

Max locked memory         2054037504           2054037504           bytes     

Max address space         unlimited            unlimited            bytes     

Max file locks            unlimited            unlimited            locks     

Max pending signals       62207                62207                signals   

Max msgqueue size         819200               819200               bytes     

Max nice priority         0                    0                    

Max realtime priority     0                    0                    

Max realtime timeout      unlimited            unlimited            us        

Core pattern: |/usr/share/apport/apport -p%p -s%s -c%c -d%d -P%P -u%u -g%g -- %E

Kernel version: Linux version 5.15.0-117-generic (buildd@lcy02-amd64-102) (gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0, GNU ld (GNU Binutils for Ubuntu) 2.38) #127-Ubuntu SMP Fri Jul 5 20:13:28 UTC 2024