2020-11-16 13:23:35 0 [Note] InnoDB: A semaphore wait:
--Thread 139696564532992 has waited at btr0cur.cc line 1480 for 122.00 seconds the semaphore:
SX-lock on RW-latch at 0x55943e5fbbb0 created in file dict0dict.cc line 2160
a writer (thread id 139627021195008) has reserved it in mode SX
number of readers 0, waiters flag 1, lock_word: 10000000
Last time write locked in file dict0stats.cc line 1969
If the lock is held for more than (however it happend only in 10.5.7, not yet observed in 10.5.8) 10mins, the server crashes;
2020-11-13 12:51:37 0 [ERROR] [FATAL] InnoDB: Semaphore wait has lasted > 600 seconds. We intentionally crash the server because it appears to be hung.
201113 12:51:37 [ERROR] mysqld got signal 6 ;
This could be because you hit a bug. It is also possible that this binary
or one of the libraries it was linked against is corrupt, improperly built,
or misconfigured. This error can also be caused by malfunctioning hardware.
To report this bug, see https://mariadb.com/kb/en/reporting-bugs
We will try our best to scrape up some info that will hopefully help
diagnose the problem, but since we have already crashed,
something is definitely wrong and this may fail.
Server version: 10.5.7-MariaDB-1:10.5.7+maria~focal-log
key_buffer_size=12582912
read_buffer_size=131072
max_used_connections=41
max_threads=1202
thread_count=43
It is possible that mysqld could use up to
key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 2658343 K bytes of memory
Hope that's ok; if not, decrease some variables in the equation.
Thread pointer: 0x0
Attempting backtrace. You can use the following information to find out
where mysqld died. If you see no messages after this, something went
terribly wrong...
stack_bottom = 0x0 thread_stack 0x49000
mysqld(my_print_stacktrace+0x32)[0x55cb65360742]
mysqld(handle_fatal_signal+0x485)[0x55cb64db7e95]
Any chance a release might be pushed forward to address this? Also is there an configuration option to disable the forced shutdown after 10min?
Olaf Buitelaar
added a comment - - edited I seem to suffer from the same issue;
2020-11-16 13:23:35 0 [Note] InnoDB: A semaphore wait:
--Thread 139696564532992 has waited at btr0cur.cc line 1480 for 122.00 seconds the semaphore:
SX-lock on RW-latch at 0x55943e5fbbb0 created in file dict0dict.cc line 2160
a writer (thread id 139627021195008) has reserved it in mode SX
number of readers 0, waiters flag 1, lock_word: 10000000
Last time write locked in file dict0stats.cc line 1969
If the lock is held for more than (however it happend only in 10.5.7, not yet observed in 10.5.8) 10mins, the server crashes;
2020-11-13 12:51:37 0 [ERROR] [FATAL] InnoDB: Semaphore wait has lasted > 600 seconds. We intentionally crash the server because it appears to be hung.
201113 12:51:37 [ERROR] mysqld got signal 6 ;
This could be because you hit a bug. It is also possible that this binary
or one of the libraries it was linked against is corrupt, improperly built,
or misconfigured. This error can also be caused by malfunctioning hardware.
To report this bug, see https://mariadb.com/kb/en/reporting-bugs
We will try our best to scrape up some info that will hopefully help
diagnose the problem, but since we have already crashed,
something is definitely wrong and this may fail.
Server version: 10.5.7-MariaDB-1:10.5.7+maria~focal-log
key_buffer_size=12582912
read_buffer_size=131072
max_used_connections=41
max_threads=1202
thread_count=43
It is possible that mysqld could use up to
key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 2658343 K bytes of memory
Hope that's ok; if not, decrease some variables in the equation.
Thread pointer: 0x0
Attempting backtrace. You can use the following information to find out
where mysqld died. If you see no messages after this, something went
terribly wrong...
stack_bottom = 0x0 thread_stack 0x49000
mysqld(my_print_stacktrace+0x32)[0x55cb65360742]
mysqld(handle_fatal_signal+0x485)[0x55cb64db7e95]
Any chance a release might be pushed forward to address this? Also is there an configuration option to disable the forced shutdown after 10min?
to have the server abort in 5 minutes (300 seconds) instead of the default timeout. I do not think that it is useful to let the server continue in a livelocked state, because service to some connections will be denied, depending on which latches the hung buf_page_create() threads are holding. Eventually, all I/O threads would be blocked and nothing could be accessed. If the hung buf_page_create() is executed as part of a CREATE TABLE operation, then all other InnoDB threads will be blocked, waiting for the data dictionary latch.
Today, we double-checked that the wait loop that was originally added in MDEV-23452 is indeed necessary. If buf_page_create() did not check that no io-fix is set, it could acquire the block->lock in exclusive mode after another thread that is executing buf_flush_page() set the write-fix and released buf_pool.mutex but did not yet acquire the block->lock in shared-exclusive mode. Note: The io_fix is protected by the buffer pool mutex, which buf_page_create() is holding.
The hang was caused because in MDEV-23456 we did not add a condition before the wait loop: if the buf_page_create() thread already holds an exclusive latch on the block (because the page was freed earlier during the mini-transaction before being reallocated), we would in vain wait for the io-fix to be removed.
The probability of this hang can be reduced by configuring some parameters related to page flushing, but I do not think that it can be prevented completely.
Marko Mäkelä
added a comment - olafbuitelaar , thank you for the report. You can use
SET GLOBAL innodb_fatal_semaphore_wait_threshold=300;
to have the server abort in 5 minutes (300 seconds) instead of the default timeout. I do not think that it is useful to let the server continue in a livelocked state, because service to some connections will be denied, depending on which latches the hung buf_page_create() threads are holding. Eventually, all I/O threads would be blocked and nothing could be accessed. If the hung buf_page_create() is executed as part of a CREATE TABLE operation, then all other InnoDB threads will be blocked, waiting for the data dictionary latch.
Today, we double-checked that the wait loop that was originally added in MDEV-23452 is indeed necessary. If buf_page_create() did not check that no io-fix is set, it could acquire the block->lock in exclusive mode after another thread that is executing buf_flush_page() set the write-fix and released buf_pool.mutex but did not yet acquire the block->lock in shared-exclusive mode. Note: The io_fix is protected by the buffer pool mutex, which buf_page_create() is holding.
The hang was caused because in MDEV-23456 we did not add a condition before the wait loop: if the buf_page_create() thread already holds an exclusive latch on the block (because the page was freed earlier during the mini-transaction before being reallocated), we would in vain wait for the io-fix to be removed.
The probability of this hang can be reduced by configuring some parameters related to page flushing, but I do not think that it can be prevented completely.
Thank you for your reply. If i can provide more information please let me know. I'll try to tweak the parameters related to page flushing. We use ```create table``` regularly to create temporary tables.
I'm not sure if it's related but since i've upgraded from 10.4.14 to 10.5.7 (the 12th and 13th to 10.5.8), the row locking times seems to be very irregular;
Olaf Buitelaar
added a comment - Thank you for your reply. If i can provide more information please let me know. I'll try to tweak the parameters related to page flushing. We use ```create table``` regularly to create temporary tables.
I'm not sure if it's related but since i've upgraded from 10.4.14 to 10.5.7 (the 12th and 13th to 10.5.8), the row locking times seems to be very irregular;
olafbuitelaar, please be aware that due to MDEV-24096 it is not safe to use 10.5.7 if any indexed virtual columns exist (including any that were created automatically). I think that row locking occurs at a higher level, above the buffer pool and page latch layer. This bug causes a real hang (livelock) that will remain until the server is killed. If any transaction that is holding row locks is being blocked due to this livelock, then of course other transactions could end up waiting for those row locks longer (until a lock wait timeout terminates the waits). As far as I can tell, such affected row locks should never be released (until the entire server process is killed).
MDEV-24227 could be a duplicate of this report. Given that this hang seems to be relatively easy to reproduce, I think that we should consider issuing an unscheduled release.
Marko Mäkelä
added a comment - olafbuitelaar , please be aware that due to MDEV-24096 it is not safe to use 10.5.7 if any indexed virtual columns exist (including any that were created automatically). I think that row locking occurs at a higher level, above the buffer pool and page latch layer. This bug causes a real hang (livelock) that will remain until the server is killed. If any transaction that is holding row locks is being blocked due to this livelock, then of course other transactions could end up waiting for those row locks longer (until a lock wait timeout terminates the waits). As far as I can tell, such affected row locks should never be released (until the entire server process is killed).
MDEV-24227 could be a duplicate of this report. Given that this hang seems to be relatively easy to reproduce, I think that we should consider issuing an unscheduled release.
MDEV-24227 turned out to be unrelated to this hang.
The scenario of this hang is that a page had been freed, a page write (or thanks to MDEV-15528, eviction) had been initiated, and the same page (with the same tablespace identifier and page number) was allocated and reused for something else. Until MDEV-12227 is fixed, we are unnecessarily writing pages of temporary tables to the data file. I think that repeatedly creating, populating and dropping InnoDB temporary tables should be a good way of reproducing this hang.
Marko Mäkelä
added a comment - MDEV-24227 turned out to be unrelated to this hang.
The scenario of this hang is that a page had been freed, a page write (or thanks to MDEV-15528 , eviction) had been initiated, and the same page (with the same tablespace identifier and page number) was allocated and reused for something else. Until MDEV-12227 is fixed, we are unnecessarily writing pages of temporary tables to the data file. I think that repeatedly creating, populating and dropping InnoDB temporary tables should be a good way of reproducing this hang.
People
Marko Mäkelä
Matthias Leich
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I seem to suffer from the same issue;
2020-11-16 13:23:35 0 [Note] InnoDB: A semaphore wait:
--Thread 139696564532992 has waited at btr0cur.cc line 1480 for 122.00 seconds the semaphore:
SX-lock on RW-latch at 0x55943e5fbbb0 created in file dict0dict.cc line 2160
a writer (thread id 139627021195008) has reserved it in mode SX
number of readers 0, waiters flag 1, lock_word: 10000000
Last time write locked in file dict0stats.cc line 1969
If the lock is held for more than (however it happend only in 10.5.7, not yet observed in 10.5.8) 10mins, the server crashes;
2020-11-13 12:51:37 0 [ERROR] [FATAL] InnoDB: Semaphore wait has lasted > 600 seconds. We intentionally crash the server because it appears to be hung.
201113 12:51:37 [ERROR] mysqld got signal 6 ;
This could be because you hit a bug. It is also possible that this binary
or one of the libraries it was linked against is corrupt, improperly built,
or misconfigured. This error can also be caused by malfunctioning hardware.
To report this bug, see https://mariadb.com/kb/en/reporting-bugs
We will try our best to scrape up some info that will hopefully help
diagnose the problem, but since we have already crashed,
something is definitely wrong and this may fail.
Server version: 10.5.7-MariaDB-1:10.5.7+maria~focal-log
key_buffer_size=12582912
read_buffer_size=131072
max_used_connections=41
max_threads=1202
thread_count=43
It is possible that mysqld could use up to
key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 2658343 K bytes of memory
Hope that's ok; if not, decrease some variables in the equation.
Thread pointer: 0x0
Attempting backtrace. You can use the following information to find out
where mysqld died. If you see no messages after this, something went
terribly wrong...
stack_bottom = 0x0 thread_stack 0x49000
mysqld(my_print_stacktrace+0x32)[0x55cb65360742]
mysqld(handle_fatal_signal+0x485)[0x55cb64db7e95]
Any chance a release might be pushed forward to address this? Also is there an configuration option to disable the forced shutdown after 10min?