SEGV in JOIN::exec() during normal shutdown

141203 11:46:38 [Note] /usr/sbin/mysqld: Normal shutdown

141203 11:46:45 [Note] Slave I/O thread exiting, read up to log 'mysql-bin.046421', position 104858337

141203 11:46:46 [ERROR] mysqld got signal 11 ;

This could be because you hit a bug. It is also possible that this binary

or one of the libraries it was linked against is corrupt, improperly built,

or misconfigured. This error can also be caused by malfunctioning hardware.

To report this bug, see http://kb.askmonty.org/en/reporting-bugs

We will try our best to scrape up some info that will hopefully help

diagnose the problem, but since we have already crashed,

something is definitely wrong and this may fail.

Server version: 5.5.29-MariaDB-log

key_buffer_size=262144

read_buffer_size=8388608

max_used_connections=201

max_threads=202

thread_count=21206

It is possible that mysqld could use up to

key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 1761298 K  bytes of memory

Hope that's ok; if not, decrease some variables in the equation.

Thread pointer: 0x0x2aac9e836cc0

Attempting backtrace. You can use the following information to find out

where mysqld died. If you see no messages after this, something went

terribly wrong...

stack_bottom = 0x2aaec74040b0 thread_stack 0x48000

(my_addr_resolve failure: fork)

/usr/sbin/mysqld(my_print_stacktrace+0x2e) [0xa975ee]

/usr/sbin/mysqld(handle_fatal_signal+0x44c) [0x6d4fcc]

/lib64/libpthread.so.0 [0x30ed80ebe0]

/usr/sbin/mysqld [0x5b6d88]

/usr/sbin/mysqld(JOIN::exec()+0x888) [0x5ce198]

/usr/sbin/mysqld(st_select_lex_unit::exec()+0x1d2) [0x601e92]

/usr/sbin/mysqld(mysql_union(THD*, LEX*, select_result*, st_select_lex_unit*, unsigned long)+0x2d) [0x60467d]

/usr/sbin/mysqld(handle_select(THD*, LEX*, select_result*, unsigned long)+0x8a) [0x5d12fa]

/usr/sbin/mysqld [0x57cc40]

/usr/sbin/mysqld(mysql_execute_command(THD*)+0x793) [0x57f4d3]

/usr/sbin/mysqld(mysql_parse(THD*, char*, unsigned int, Parser_state*)+0x1b1) [0x585f61]

/usr/sbin/mysqld(dispatch_command(enum_server_command, THD*, char*, unsigned int)+0x153a) [0x5874aa]

/usr/sbin/mysqld(do_command(THD*)+0xd2) [0x587842]

/usr/sbin/mysqld(do_handle_one_connection(THD*)+0x143) [0x63ddb3]

/usr/sbin/mysqld(handle_one_connection+0x4c) [0x63defc]

/lib64/libpthread.so.0 [0x30ed80677d]

/lib64/libc.so.6(clone+0x6d) [0x30ed0d3c1d]

Trying to get some variables.

Some pointers may be invalid and cause the dump to abort.

Query (0x358bf338): SELECT ...

FROM locations loc

LEFT OUTER JOIN fc

ON fc.sLocType = loc.sType

AND fc.sLocCode = loc.sCode

AND fc.sCustomCode = 'TWC'

AND fc.sPeriod1FcastShort IS NOT NULL

WHERE loc.sType = 'DIST'

AND loc.sCode = 'S00'

....

UNION

...

Connection ID (thread ID): 82256764

Status: KILL_SERVER

Optimizer switch: index_merge=on,index_merge_union=on,index_merge_sort_union=on,index_merge_intersection=on,index_merge_sort_intersection=off,engine_condition_pushdown=off,index_condition_pushdown=on,derived_merge=on,derived_with_keys=on,firstmatch=on,loosescan=on,materialization=on,in_to_exists=on,semijoin=on,partial_match_rowid_merge=on,partial_match_table_scan=on,subquery_cache=on,mrr=on,mrr_cost_based=off,mrr_sort_keys=on,outer_join_with_cache=on,semijoin_with_cache=on,join_cache_incremental=on,join_cache_hashed=on,join_cache_bka=on,optimize_join_buffer_size=off,table_elimination=on,extended_keys=off

The manual page at http://dev.mysql.com/doc/mysql/en/crashing.html contains

information that should help you find out what is causing the crash.

141203 11:47:06 mysqld_safe Number of processes running now: 0

141203 11:47:06 mysqld_safe mysqld restarted  

141203 11:47:06 [Warning] The syntax '--log-slow-queries' is deprecated and will be removed in a future release. Please use '--slow-query-log'/'--slow-query-log-file' instead. 

141203 11:47:06 [Warning] An old style --language or -lc-message-dir value with language specific part detected: /usr/share/mysql/english/

141203 11:47:06 [Warning] Use --lc-messages-dir without language specific part instead.

141203 11:47:06 InnoDB: The InnoDB memory heap is disabled

141203 11:47:06 InnoDB: Mutexes and rw_locks use GCC atomic builtins

141203 11:47:06 InnoDB: Compressed tables use zlib 1.2.3

141203 11:47:06 InnoDB: Using Linux native AIO

141203 11:47:06 InnoDB: Error: Linux Native AIO is not supported on tmpdir.

InnoDB: You can either move tmpdir to a file system that supports native AIO

InnoDB: or you can set innodb_use_native_aio to FALSE to avoid this message.

141203 11:47:06 InnoDB: Error: Linux Native AIO check on tmpdir returned error[22]

141203 11:47:06 InnoDB: Warning: Linux Native AIO disabled.

141203 11:47:06 InnoDB: Initializing buffer pool, size = 6.0G

141203 11:47:07 InnoDB: Completed initialization of buffer pool

141203 11:47:07 InnoDB: highest supported file format is Barracuda.

InnoDB: The log sequence number in ibdata files does not match

InnoDB: the log sequence number in the ib_logfiles!

141203 11:47:07  InnoDB: Database was not shut down normally!

InnoDB: Starting crash recovery.

InnoDB: Reading tablespace information from the .ibd files...

InnoDB: Restoring possible half-written data pages from the doublewrite

InnoDB: buffer...

InnoDB: In a MySQL replication slave the last master binlog file

InnoDB: position 18251098, file name mysql-bin.046419

InnoDB: and relay log file

InnoDB: position 18251382, file name ./mysqld-relay-bin.062653

InnoDB: Last MySQL binlog file position 0 15525751, file name /database/tlog/mysql-bin.070307

141203 11:47:10  InnoDB: Waiting for the background threads to start

141203 11:47:11 Percona XtraDB (http://www.percona.com) 1.1.8-29.3 started; log sequence number 4858350400666

141203 11:47:11 [Note] Plugin 'FEEDBACK' is disabled.

141203 11:47:11 [Note] Recovering after a crash using /database/tlog/mysql-bin

141203 11:47:11 [Note] Starting crash recovery...

141203 11:47:11 [Note] Crash recovery finished.  

Last_SQL_Error: Error 'Incorrect key file for table 'l_sample'; 

 try to repair it' on query. Default database: ''. 

 Query: 'CREATE UNIQUE INDEX `idx_l_sample_1` ON l_sample (`source`,`timestamp_utc`,`latitude`,`longitude`)'

mysql> stop slave;

mysql> set global sql_slave_skip_counter = 1;

mysql> start slave;

# /etc/init.d/mysql restart

Shutting down MySQL............The server quit without updating PID file (/var/lib/mysql/mysqld.pid).[FAILED]

Failed to stop running server, so refusing to try to start.[FAILED]

| l_sample | CREATE TABLE `l_sample` (

  `id` int(10) unsigned NOT NULL AUTO_INCREMENT,

  `source` varchar(10) NOT NULL,

  `timestamp_utc` datetime NOT NULL,

  `latitude` decimal(10,7) NOT NULL,

  `longitude` decimal(10,7) NOT NULL,

  `amperage` decimal(5,1) DEFAULT NULL,

  `event_type` varchar(10) DEFAULT NULL,

  PRIMARY KEY (`id`),

  UNIQUE KEY `idx_l_sample_1` (`source`,`timestamp_utc`,`latitude`,`longitude`)

) ENGINE=InnoDB AUTO_INCREMENT=24011281 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC |