AWS RDS mariadb 10.5.12 crashes upon OS update

2022-06-24 2:59:54 0 [Warning] You need to use --log-bin to make --log-slave-updates work.

2022-06-24 2:59:54 0 [Note] InnoDB: Uses event mutexes

2022-06-24 2:59:54 0 [Note] InnoDB: Compressed tables use zlib 1.2.11

2022-06-24 2:59:54 0 [Note] InnoDB: Number of pools: 1

2022-06-24 2:59:54 0 [Note] InnoDB: Using crc32 + pclmulqdq instructions

2022-06-24 2:59:54 0 [Note] InnoDB: Using Linux native AIO

2022-06-24 2:59:54 0 [Note] InnoDB: Initializing buffer pool, total size = 2147483648, chunk size = 134217728

2022-06-24 2:59:54 0 [Note] InnoDB: Completed initialization of buffer pool

2022-06-24 2:59:54 0 [Note] InnoDB: Starting crash recovery from checkpoint LSN=1343302636904,1343302636904

2022-06-24 3:00:00 0 [Note] InnoDB: 2 transaction(s) which must be rolled back or cleaned up in total 2 row operations to undo

2022-06-24 3:00:00 0 [Note] InnoDB: Trx id counter is 8615938331

2022-06-24 3:00:00 0 [Note] InnoDB: Starting final batch to recover 25079 pages from redo log.

2022-06-24 3:00:16 0 [Note] InnoDB: Last binlog file '/rdsdbdata/log/binlog/mysql-bin-changelog.667099', position 4312

2022-06-24 3:00:16 0 [Note] InnoDB: 128 rollback segments are active.

2022-06-24 3:00:16 0 [Note] InnoDB: Starting in background the rollback of recovered transactions

2022-06-24 3:00:16 0 [Note] InnoDB: To roll back: 2 transactions, 2 rows

2022-06-24 3:00:16 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"

2022-06-24 3:00:16 0 [Note] InnoDB: Creating shared tablespace for temporary tables

2022-06-24 3:00:16 0 [Note] InnoDB: Setting file '/rdsdbdata/db/innodb/ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...

2022-06-24 3:00:16 0 [Note] InnoDB: File '/rdsdbdata/db/innodb/ibtmp1' size is now 12 MB.

2022-06-24 3:00:16 0 [ERROR] [FATAL] InnoDB: Page old data size 8606 new data size 5454, page old max ins size 7544 new max ins size 10696

220624 3:00:16 [ERROR] mysqld got signal 6 ;

This could be because you hit a bug. It is also possible that this binary

or one of the libraries it was linked against is corrupt, improperly built,

or misconfigured. This error can also be caused by malfunctioning hardware.

To report this bug, see https://mariadb.com/kb/en/reporting-bugs

We will try our best to scrape up some info that will hopefully help

diagnose the problem, but since we have already crashed,

something is definitely wrong and this may fail.

Server version: 10.5.12-MariaDB

key_buffer_size=16777216

read_buffer_size=262144

max_used_connections=0

max_threads=5002

thread_count=0

It is possible that mysqld could use up to

key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 11660859 K bytes of memory

Hope that's ok; if not, decrease some variables in the equation.

Thread pointer: 0x0

Attempting backtrace. You can use the following information to find out

where mysqld died. If you see no messages after this, something went

terribly wrong...

stack_bottom = 0x0 thread_stack 0x40000

2022-06-24 3:00:16 0 [Note] InnoDB: 10.5.12 started; log sequence number 1343572670349; transaction id 8615938332

2022-06-24 3:00:16 0 [Note] InnoDB: Loading buffer pool(s) from /rdsdbdata/db/innodb/ib_buffer_pool

2022-06-24 3:00:16 0 [Note] Server socket created on IP: '::'.

2022-06-24 3:00:16 0 [Note] Reading of all Master_info entries succeeded

2022-06-24 3:00:16 0 [Note] Added new Master_info '' to hash table

2022-06-24 3:00:16 0 [Note] /rdsdbbin/mysql/bin/mysqld: ready for connections.

Version: '10.5.12-MariaDB' socket: '/tmp/mysql.sock' port: 3306 managed by https://aws.amazon.com/rds/

mysys/stacktrace.c:213(my_print_stacktrace)[0x55b7e23a1c5e]

sql/signal_handler.cc:221(handle_fatal_signal)[0x55b7e1b5376a]

sigaction.c:0(__restore_rt)[0x2b656a1e6100]

:0(__GI_raise)[0x2b656a4285f7]

:0(__GI_abort)[0x2b656a429ce8]

:0(ib::fatal::~fatal())[0x55b7e21f57d1]

btr/btr0btr.cc:1484(btr_page_reorganize_low)[0x55b7e21fb246]

btr/btr0btr.cc:1646(btr_page_reorganize(page_cur_t*, dict_index_t*, mtr_t*))[0x55b7e21fb617]

include/dict0mem.h:1840(dict_table_t::not_redundant() const)[0x55b7e20e0f93]

ibuf/ibuf0ibuf.cc:3881(ibuf_insert_to_index_page)[0x55b7e20e6a11]

buf/buf0buf.cc:3339(buf_page_get_low(page_id_t, unsigned long, unsigned long, buf_block_t*, unsigned long, char const*, unsigned int, mtr_t*, dberr_t*, bool))[0x55b7e223052b]

buf/buf0buf.cc:3421(buf_page_get_gen(page_id_t, unsigned long, unsigned long, buf_block_t*, unsigned long, char const*, unsigned int, mtr_t*, dberr_t*, bool))[0x55b7e2230576]

btr/btr0cur.cc:1622(btr_cur_search_to_nth_level_func(dict_index_t*, unsigned long, dtuple_t const*, page_cur_mode_t, unsigned long, btr_cur_t*, rw_lock_t*, char const*, unsigned int, mtr_t*, unsigned long))[0x55b7e2210941]

include/btr0pcur.ic:448(btr_pcur_open_low)[0x55b7e2189ca2]

row/row0row.cc:1306(row_search_index_entry(dict_index_t*, dtuple_t const*, unsigned long, btr_pcur_t*, mtr_t*))[0x55b7e2189e0f]

row/row0uins.cc:260(row_undo_ins_remove_sec_low)[0x55b7e22faee3]

row/row0uins.cc:320(row_undo_ins_remove_sec)[0x55b7e22fb5b2]

row/row0undo.cc:420(row_undo)[0x55b7e2194d0a]

que/que0que.cc:944(que_thr_step)[0x55b7e213ba30]

trx/trx0roll.cc:631(trx_rollback_active)[0x55b7e21d1e90]

trx/trx0roll.cc:784(trx_rollback_recovered(bool))[0x55b7e21d255f]

trx/trx0roll.cc:838(trx_rollback_all_recovered)[0x55b7e21d2c6a]

pthread_create.c:0(start_thread)[0x2b656a1dedc5]

??:0(__clone)[0x2b656a4e9c9d]

The manual page at https://mariadb.com/kb/en/how-to-produce-a-full-stack-trace-for-mysqld/ contains

information that should help you find out what is causing the crash.

Writing a core file...

Working directory at /rdsdbdata/db

Resource Limits:

Limit Soft Limit Hard Limit Units

Max cpu time unlimited unlimited seconds

Max file size unlimited unlimited bytes

Max data size unlimited unlimited bytes

Max stack size unlimited unlimited bytes

Max core file size 0 unlimited bytes

Max resident set unlimited unlimited bytes

Max processes unlimited unlimited processes

Max open files 65535 65535 files

Max locked memory 65536 65536 bytes

Max address space unlimited unlimited bytes

Max file locks unlimited unlimited locks

Max pending signals 15735 15735 signals

Max msgqueue size 819200 819200 bytes

Max nice priority 0 0

Max realtime priority 0 0

Max realtime timeout unlimited unlimited us

Core pattern: /rdsdbdata/tmp/core-%e-%p

2022-06-24 3:01:11 0 [Note] /rdsdbbin/mysql/bin/mysqld (mysqld 10.5.12-MariaDB) starting as process 17497 ...

2022-06-24 3:01:11 0 [Warning] You need to use --log-bin to make --log-slave-updates work.

2022-06-24 3:01:11 0 [Note] InnoDB: Uses event mutexes

2022-06-24 3:01:11 0 [Note] InnoDB: Compressed tables use zlib 1.2.11

2022-06-24 3:01:11 0 [Note] InnoDB: Number of pools: 1

2022-06-24 3:01:11 0 [Note] InnoDB: Using crc32 + pclmulqdq instructions

2022-06-24 3:01:11 0 [Note] InnoDB: Using Linux native AIO

2022-06-24 3:01:11 0 [Note] InnoDB: Initializing buffer pool, total size = 2147483648, chunk size = 134217728

2022-06-24 3:01:11 0 [Note] InnoDB: Completed initialization of buffer pool

2022-06-24 3:01:11 0 [Note] InnoDB: Starting crash recovery from checkpoint LSN=1343302636904,1343302636904

2022-06-24 3:01:17 0 [Note] InnoDB: 2 transaction(s) which must be rolled back or cleaned up in total 2 row operations to undo

2022-06-24 3:01:17 0 [Note] InnoDB: Trx id counter is 8615938331

2022-06-24 3:01:17 0 [Note] InnoDB: Starting final batch to recover 25079 pages from redo log.

2022-06-24 3:01:33 0 [Note] InnoDB: Last binlog file '/rdsdbdata/log/binlog/mysql-bin-changelog.667099', position 4312

2022-06-24 3:01:33 0 [Note] InnoDB: 128 rollback segments are active.

2022-06-24 3:01:33 0 [Note] InnoDB: Starting in background the rollback of recovered transactions

2022-06-24 3:01:33 0 [Note] InnoDB: To roll back: 2 transactions, 2 rows

2022-06-24 3:01:33 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"

2022-06-24 3:01:33 0 [Note] InnoDB: Creating shared tablespace for temporary tables

2022-06-24 3:01:33 0 [Note] InnoDB: Setting file '/rdsdbdata/db/innodb/ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...

2022-06-24 3:01:33 0 [Note] InnoDB: File '/rdsdbdata/db/innodb/ibtmp1' size is now 12 MB.

2022-06-24 3:01:33 0 [ERROR] [FATAL] InnoDB: Page old data size 8606 new data size 5454, page old max ins size 7544 new max ins size 10696

220624 3:01:33 [ERROR] mysqld got signal 6 ;

This could be because you hit a bug. It is also possible that this binary

or one of the libraries it was linked against is corrupt, improperly built,

or misconfigured. This error can also be caused by malfunctioning hardware.

To report this bug, see https://mariadb.com/kb/en/reporting-bugs

We will try our best to scrape up some info that will hopefully help

diagnose the problem, but since we have already crashed,

something is definitely wrong and this may fail.

Server version: 10.5.12-MariaDB

key_buffer_size=16777216

read_buffer_size=262144

max_used_connections=0

max_threads=5002

thread_count=0

It is possible that mysqld could use up to

key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 11660859 K bytes of memory

Hope that's ok; if not, decrease some variables in the equation.

Thread pointer: 0x0

Attempting backtrace. You can use the following information to find out

where mysqld died. If you see no messages after this, something went

terribly wrong...

stack_bottom = 0x0 thread_stack 0x40000

2022-06-24 3:01:33 0 [Note] InnoDB: 10.5.12 started; log sequence number 1343572974007; transaction id 8615938332

2022-06-24 3:01:33 0 [Note] InnoDB: Loading buffer pool(s) from /rdsdbdata/db/innodb/ib_buffer_pool

2022-06-24 3:01:33 0 [Note] Server socket created on IP: '::'.

2022-06-24 3:01:33 0 [Note] Reading of all Master_info entries succeeded

2022-06-24 3:01:33 0 [Note] Added new Master_info '' to hash table

2022-06-24 3:01:33 0 [Note] /rdsdbbin/mysql/bin/mysqld: ready for connections.

Version: '10.5.12-MariaDB' socket: '/tmp/mysql.sock' port: 3306 managed by https://aws.amazon.com/rds/

mysys/stacktrace.c:213(my_print_stacktrace)[0x560cd2b17c5e]

sql/signal_handler.cc:221(handle_fatal_signal)[0x560cd22c976a]

sigaction.c:0(__restore_rt)[0x2abefd95a100]

:0(__GI_raise)[0x2abefdb9c5f7]

:0(__GI_abort)[0x2abefdb9dce8]

:0(ib::fatal::~fatal())[0x560cd296b7d1]

btr/btr0btr.cc:1484(btr_page_reorganize_low)[0x560cd2971246]

btr/btr0btr.cc:1646(btr_page_reorganize(page_cur_t*, dict_index_t*, mtr_t*))[0x560cd2971617]

include/dict0mem.h:1840(dict_table_t::not_redundant() const)[0x560cd2856f93]

ibuf/ibuf0ibuf.cc:3881(ibuf_insert_to_index_page)[0x560cd285ca11]

buf/buf0buf.cc:3339(buf_page_get_low(page_id_t, unsigned long, unsigned long, buf_block_t*, unsigned long, char const*, unsigned int, mtr_t*, dberr_t*, bool))[0x560cd29a652b]

buf/buf0buf.cc:3421(buf_page_get_gen(page_id_t, unsigned long, unsigned long, buf_block_t*, unsigned long, char const*, unsigned int, mtr_t*, dberr_t*, bool))[0x560cd29a6576]

btr/btr0cur.cc:1622(btr_cur_search_to_nth_level_func(dict_index_t*, unsigned long, dtuple_t const*, page_cur_mode_t, unsigned long, btr_cur_t*, rw_lock_t*, char const*, unsigned int, mtr_t*, unsigned long))[0x560cd2986941]

include/btr0pcur.ic:448(btr_pcur_open_low)[0x560cd28ffca2]

row/row0row.cc:1306(row_search_index_entry(dict_index_t*, dtuple_t const*, unsigned long, btr_pcur_t*, mtr_t*))[0x560cd28ffe0f]

row/row0uins.cc:260(row_undo_ins_remove_sec_low)[0x560cd2a70ee3]

row/row0uins.cc:320(row_undo_ins_remove_sec)[0x560cd2a715b2]

row/row0undo.cc:420(row_undo)[0x560cd290ad0a]

que/que0que.cc:944(que_thr_step)[0x560cd28b1a30]

trx/trx0roll.cc:631(trx_rollback_active)[0x560cd2947e90]

trx/trx0roll.cc:784(trx_rollback_recovered(bool))[0x560cd294855f]

trx/trx0roll.cc:838(trx_rollback_all_recovered)[0x560cd2948c6a]

pthread_create.c:0(start_thread)[0x2abefd952dc5]

??:0(__clone)[0x2abefdc5dc9d]

The manual page at https://mariadb.com/kb/en/how-to-produce-a-full-stack-trace-for-mysqld/ contains

information that should help you find out what is causing the crash.

Writing a core file...

Working directory at /rdsdbdata/db

Resource Limits:

Limit Soft Limit Hard Limit Units

Max cpu time unlimited unlimited seconds

Max file size unlimited unlimited bytes

Max data size unlimited unlimited bytes

Max stack size unlimited unlimited bytes

Max core file size 0 unlimited bytes

Max resident set unlimited unlimited bytes

Max processes unlimited unlimited processes

Max open files 65535 65535 files

Max locked memory 65536 65536 bytes

Max address space unlimited unlimited bytes

Max file locks unlimited unlimited locks

Max pending signals 15735 15735 signals

Max msgqueue size 819200 819200 bytes

Max nice priority 0 0

Max realtime priority 0 0

Max realtime timeout unlimited unlimited us

Core pattern: /rdsdbdata/tmp/core-%e-%p

2022-06-24 3:02:28 0 [Warning] You need to use --log-bin to make --log-slave-updates work.

2022-06-24 3:02:28 0 [Note] InnoDB: Uses event mutexes

2022-06-24 3:02:28 0 [Note] InnoDB: Compressed tables use zlib 1.2.11

2022-06-24 3:02:28 0 [Note] InnoDB: Number of pools: 1

2022-06-24 3:02:28 0 [Note] InnoDB: Using crc32 + pclmulqdq instructions

2022-06-24 3:02:28 0 [Note] InnoDB: Using Linux native AIO

2022-06-24 3:02:28 0 [Note] InnoDB: Initializing buffer pool, total size = 2147483648, chunk size = 134217728

2022-06-24 3:02:29 0 [Note] InnoDB: Completed initialization of buffer pool

2022-06-24 3:02:29 0 [Note] InnoDB: Starting crash recovery from checkpoint LSN=1343302636904,1343302636904

2022-06-24 3:02:34 0 [Note] InnoDB: 2 transaction(s) which must be rolled back or cleaned up in total 2 row operations to undo

2022-06-24 3:02:34 0 [Note] InnoDB: Trx id counter is 8615938331

2022-06-24 3:02:34 0 [Note] InnoDB: Starting final batch to recover 25079 pages from redo log.

2022-06-24 3:02:50 0 [Note] InnoDB: Last binlog file '/rdsdbdata/log/binlog/mysql-bin-changelog.667099', position 4312

2022-06-24 3:02:50 0 [Note] InnoDB: 128 rollback segments are active.

2022-06-24 3:02:50 0 [Note] InnoDB: Starting in background the rollback of recovered transactions

2022-06-24 3:02:50 0 [Note] InnoDB: To roll back: 2 transactions, 2 rows

2022-06-24 3:02:50 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"

2022-06-24 3:02:50 0 [Note] InnoDB: Creating shared tablespace for temporary tables

2022-06-24 3:02:50 0 [Note] InnoDB: Setting file '/rdsdbdata/db/innodb/ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...

2022-06-24 3:02:50 0 [Note] InnoDB: File '/rdsdbdata/db/innodb/ibtmp1' size is now 12 MB.

2022-06-24 3:02:50 0 [ERROR] [FATAL] InnoDB: Page old data size 8606 new data size 5454, page old max ins size 7544 new max ins size 10696

220624 3:02:50 [ERROR] mysqld got signal 6 ;

This could be because you hit a bug. It is also possible that this binary

or one of the libraries it was linked against is corrupt, improperly built,

or misconfigured. This error can also be caused by malfunctioning hardware.

To report this bug, see https://mariadb.com/kb/en/reporting-bugs

We will try our best to scrape up some info that will hopefully help

diagnose the problem, but since we have already crashed,

something is definitely wrong and this may fail.

Server version: 10.5.12-MariaDB

key_buffer_size=16777216

read_buffer_size=262144

max_used_connections=0

max_threads=5002

thread_count=0

It is possible that mysqld could use up to

key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 11660859 K bytes of memory

Hope that's ok; if not, decrease some variables in the equation.

Thread pointer: 0x0

Attempting backtrace. You can use the following information to find out

where mysqld died. If you see no messages after this, something went

terribly wrong...

stack_bottom = 0x0 thread_stack 0x40000

2022-06-24 3:02:50 0 [Note] InnoDB: 10.5.12 started; log sequence number 1343573277665; transaction id 8615938332

2022-06-24 3:02:50 0 [Note] InnoDB: Loading buffer pool(s) from /rdsdbdata/db/innodb/ib_buffer_pool

2022-06-24 3:02:50 0 [Note] Server socket created on IP: '::'.

2022-06-24 3:02:50 0 [Note] Reading of all Master_info entries succeeded

2022-06-24 3:02:50 0 [Note] Added new Master_info '' to hash table

2022-06-24 3:02:50 0 [Note] /rdsdbbin/mysql/bin/mysqld: ready for connections.

Version: '10.5.12-MariaDB' socket: '/tmp/mysql.sock' port: 3306 managed by https://aws.amazon.com/rds/

mysys/stacktrace.c:213(my_print_stacktrace)[0x563f02949c5e]

sql/signal_handler.cc:221(handle_fatal_signal)[0x563f020fb76a]

sigaction.c:0(__restore_rt)[0x2b828c588100]

:0(__GI_raise)[0x2b828c7ca5f7]

:0(__GI_abort)[0x2b828c7cbce8]

:0(ib::fatal::~fatal())[0x563f0279d7d1]

btr/btr0btr.cc:1484(btr_page_reorganize_low)[0x563f027a3246]

btr/btr0btr.cc:1646(btr_page_reorganize(page_cur_t*, dict_index_t*, mtr_t*))[0x563f027a3617]

include/dict0mem.h:1840(dict_table_t::not_redundant() const)[0x563f02688f93]

ibuf/ibuf0ibuf.cc:3881(ibuf_insert_to_index_page)[0x563f0268ea11]

buf/buf0buf.cc:3339(buf_page_get_low(page_id_t, unsigned long, unsigned long, buf_block_t*, unsigned long, char const*, unsigned int, mtr_t*, dberr_t*, bool))[0x563f027d852b]

buf/buf0buf.cc:3421(buf_page_get_gen(page_id_t, unsigned long, unsigned long, buf_block_t*, unsigned long, char const*, unsigned int, mtr_t*, dberr_t*, bool))[0x563f027d8576]

btr/btr0cur.cc:1622(btr_cur_search_to_nth_level_func(dict_index_t*, unsigned long, dtuple_t const*, page_cur_mode_t, unsigned long, btr_cur_t*, rw_lock_t*, char const*, unsigned int, mtr_t*, unsigned long))[0x563f027b8941]

include/btr0pcur.ic:448(btr_pcur_open_low)[0x563f02731ca2]

row/row0row.cc:1306(row_search_index_entry(dict_index_t*, dtuple_t const*, unsigned long, btr_pcur_t*, mtr_t*))[0x563f02731e0f]

row/row0uins.cc:260(row_undo_ins_remove_sec_low)[0x563f028a2ee3]

row/row0uins.cc:320(row_undo_ins_remove_sec)[0x563f028a35b2]

row/row0undo.cc:420(row_undo)[0x563f0273cd0a]

que/que0que.cc:944(que_thr_step)[0x563f026e3a30]

trx/trx0roll.cc:631(trx_rollback_active)[0x563f02779e90]

trx/trx0roll.cc:784(trx_rollback_recovered(bool))[0x563f0277a55f]

trx/trx0roll.cc:838(trx_rollback_all_recovered)[0x563f0277ac6a]

pthread_create.c:0(start_thread)[0x2b828c580dc5]

??:0(__clone)[0x2b828c88bc9d]

The manual page at https://mariadb.com/kb/en/how-to-produce-a-full-stack-trace-for-mysqld/ contains

information that should help you find out what is causing the crash.

Writing a core file...

Working directory at /rdsdbdata/db

Resource Limits:

Limit Soft Limit Hard Limit Units

Max cpu time unlimited unlimited seconds

Max file size unlimited unlimited bytes

Max data size unlimited unlimited bytes

Max stack size unlimited unlimited bytes

Max core file size 0 unlimited bytes

Max resident set unlimited unlimited bytes

Max processes unlimited unlimited processes

Max open files 65535 65535 files

Max locked memory 65536 65536 bytes

Max address space unlimited unlimited bytes

Max file locks unlimited unlimited locks

Max pending signals 15735 15735 signals

Max msgqueue size 819200 819200 bytes

Max nice priority 0 0

Max realtime priority 0 0

Max realtime timeout unlimited unlimited us

Core pattern: /rdsdbdata/tmp/core-%e-%p