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  1. MariaDB Server
  2. MDEV-24398

MariaDB Galera Connect Timeout and Recovery Leads to Race Condition Out of Memory

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      Description

      We get the following errors, and then the Galera node looses Sync. After that, the database starts to leak memory until all memory on the node is exhausted. So, there is some big memory leak somewhere.

      2020-12-11 13:22:31 0 [Warning] WSREP: Failed to report last committed e039639e-2068-11eb-999d-464a96eae14a:54072039, -110 (Connection timed out)
      2020-12-11 13:38:26 0 [Warning] WSREP: Failed to report last committed e039639e-2068-11eb-999d-464a96eae14a:54421149, -110 (Connection timed out)
      2020-12-11 13:47:24 6 [ERROR] InnoDB: Conflicting lock on table: `cacti`.`poller_output` index: PRIMARY that has lock
      RECORD LOCKS space id 1475 page no 195 n bits 496 index PRIMARY of table `cacti`.`poller_output` trx id 150552595 lock_mode X
      Record lock, heap no 1 PHYSICAL RECORD: n_fields 1; compact format; info bits 0
      0: len 8; hex 73757072656d756d; asc supremum;;

      2020-12-11 13:47:24 6 [ERROR] InnoDB: WSREP state:
      2020-12-11 13:47:24 6 [ERROR] WSREP: Thread BF trx_id: 150552601 thread: 6 seqno: 54648920 client_state: exec client_mode: high priority transaction_mode: executing applier: 1 toi: 0 local: 0 query: INSERT INTO poller_output (local_data_id, rrd_name, time, output) VALUES (63018,'unavail_slots','2020-12-11 13:45:04','0'),(194090,'cpu_time','2020-12-11 13:45:04','0'),(194090,'run_time','2020-12-11 13:45:04','0'),(259882,'runJOBS','2020-12-11 13:45:04','0'),(63786,'cpuUtil','2020-12-11 13:45:04','2.05'),(63786,'slotUtil','2020-12-11 13:45:04','1.8'),(63786,'memSlotUtil','2020-12-11 13:45:04','28.571428571428573'),(194858,'cpu_time','2020-12-11 13:45:04','0'),(194858,'run_time','2020-12-11 13:45:04','0'),(260650,'efficiency','2020-12-11 13:45:04','0'),(195626,'cpu_time','2020-12-11 13:45:04','0'),(195626,'run_time','2020-12-11 13:45:04','0'),(261418,'avg_swap','2020-12-11 13:45:04','0'),(261418,'max_swap','2020-12-11 13:45:04','0'),(65322,'cpuUtil','2020-12-11 13:45:04','28.300000000000004'),(65322,'slotUtil','2020-12-11 13:45:04','72.3'),(6
      2020-12-11 13:47:24 6 [ERROR] WSREP: Thread BF trx_id: 150552595 thread: 2 seqno: 54648914 client_state: exec client_mode: high priority transaction_mode: executing applier: 1 toi: 0 local: 0 query: DELETE FROM poller_output WHERE local_data_id IN (65777,65777,65777,65925,65925,65925,65928,65928,65928,65930,65930,65930,65934,65934,65934,65940,65940,65940,65964,65964,65964,65970,65970,65970,65972,65972,65972,65973,65973,65973,65976,65976,65976,65981,65981,65981,65988,65988,65988,65993,65993,65993,65997,65997,65997,66003,66003,66003,66008,66008,66008,66015,66015,66015,66021,66021,66021,66023,66023,66023,66027,66027,66027,66032,66032,66032,66036,66036,66036,66038,66038,66038,67264,67264,67264,67264,67264,67264,67264,67276,67276,67282,67282,67291,67300,67300,67300,67309,67309,67309,67309,67309,67318,67531,67531,67531,67540,67540,67540,67546,67546,67546,67558,67558,67558,67564,67564,67564,67717,67717,67717,67724,67724,67724,67763,67763,67763,67775,67775,67775,67786,67786,67786,67795,67795,67795,67804,67804,67804,67813,67813,67813,67822,67822,
      2020-12-11 13:47:24 0x7fad608c1700 InnoDB: Assertion failure in file /home/buildbot/buildbot/padding_for_CPACK_RPM_BUILD_SOURCE_DIRS_PREFIX/mariadb-10.5.8/storage/innobase/lock/lock0lock.cc line 655
      InnoDB: We intentionally generate a memory trap.
      InnoDB: Submit a detailed bug report to https://jira.mariadb.org/
      InnoDB: If you get repeated assertion failures or crashes, even
      InnoDB: immediately after the mysqld startup, there may be
      InnoDB: corruption in the InnoDB tablespace. Please refer to
      InnoDB: https://mariadb.com/kb/en/library/innodb-recovery-modes/
      InnoDB: about forcing recovery.
      201211 13:47:24 [ERROR] mysqld got signal 6 ;
      This could be because you hit a bug. It is also possible that this binary
      or one of the libraries it was linked against is corrupt, improperly built,
      or misconfigured. This error can also be caused by malfunctioning hardware.

      To report this bug, see https://mariadb.com/kb/en/reporting-bugs

      We will try our best to scrape up some info that will hopefully help
      diagnose the problem, but since we have already crashed,
      something is definitely wrong and this may fail.

      Server version: 10.5.8-MariaDB-log
      key_buffer_size=134217728
      read_buffer_size=131072
      max_used_connections=26
      max_threads=1502
      thread_count=36
      It is possible that mysqld could use up to
      key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 307971051 K bytes of memory
      Hope that's ok; if not, decrease some variables in the equation.

      Thread pointer: 0x7ea910000c58
      Attempting backtrace. You can use the following information to find out
      where mysqld died. If you see no messages after this, something went
      terribly wrong...
      stack_bottom = 0x7fad608c0c18 thread_stack 0x49000
      /usr/sbin/mariadbd(my_print_stacktrace+0x2e)[0x55ead1f3c07e]
      /usr/sbin/mariadbd(handle_fatal_signal+0x485)[0x55ead19d15e5]
      sigaction.c:0(__restore_rt)[0x7fb00df9ddd0]
      :0(__GI_raise)[0x7fb00bd3c70f]
      :0(__GI_abort)[0x7fb00bd26b25]
      /usr/sbin/mariadbd(+0x62c985)[0x55ead16b4985]
      /usr/sbin/mariadbd(+0x608cc5)[0x55ead1690cc5]
      /usr/sbin/mariadbd(+0xc56944)[0x55ead1cde944]
      /usr/sbin/mariadbd(+0xc5bd6a)[0x55ead1ce3d6a]
      /usr/sbin/mariadbd(+0xd68483)[0x55ead1df0483]
      /usr/sbin/mariadbd(+0xcb94d5)[0x55ead1d414d5]
      /usr/sbin/mariadbd(+0xcbd4e6)[0x55ead1d454e6]
      /usr/sbin/mariadbd(+0xcbe0b4)[0x55ead1d460b4]
      /usr/sbin/mariadbd(+0xccf967)[0x55ead1d57967]
      /usr/sbin/mariadbd(+0xc16229)[0x55ead1c9e229]
      /usr/sbin/mariadbd(_ZN7handler12ha_write_rowEPKh+0x13f)[0x55ead19dee4f]
      /usr/sbin/mariadbd(_ZN14Rows_log_event9write_rowEP14rpl_group_infob+0x175)[0x55ead1ad1f45]
      /usr/sbin/mariadbd(_ZN20Write_rows_log_event11do_exec_rowEP14rpl_group_info+0x7d)[0x55ead1ad24fd]
      ??:0(Wsrep_server_service::log_dummy_write_set(wsrep::client_state&, wsrep::ws_meta const&))[0x55ead1ac75bc]
      lock/lock0lock.cc:655(wsrep_assert_no_bf_bf_wait)[0x55ead1c6a29c]
      lock/lock0lock.cc:1095(lock_rec_other_has_conflicting)[0x55ead1c538e4]
      lock/lock0lock.cc:5138(lock_rec_insert_check_and_lock(unsigned long, unsigned char const*, buf_block_t*, dict_index_t*, que_thr_t*, mtr_t*, bool*))[0x55ead1fc2b32]
      btr/btr0cur.cc:3264(btr_cur_ins_lock_and_undo)[0x55ead1fc378d]
      row/row0ins.cc:2743(row_ins_clust_index_entry_low(unsigned long, unsigned long, dict_index_t*, unsigned long, dtuple_t*, unsigned long, que_thr_t*))[0x55ead1fd7164]
      src/trx_handle.cpp:387(galera::TrxHandleSlave::apply(void*, wsrep_cb_status (void*, wsrep_ws_handle const*, unsigned int, wsrep_buf const*, wsrep_trx_meta const*, bool*), wsrep_trx_meta const&, bool&))[0x7fb00a0d0224]
      src/replicator_smm.cpp:504(galera::ReplicatorSMM::apply_trx(void*, galera::TrxHandleSlave&))[0x7fb00a10de88]
      src/replicator_smm.cpp:2145(galera::ReplicatorSMM::process_trx(void*, boost::shared_ptr<galera::TrxHandleSlave> const&))[0x7fb00a112d3e]
      src/gcs_action_source.cpp:63(galera::GcsActionSource::process_writeset(void*, gcs_action const&, bool&))[0x7fb00a0ec89f]
      src/gcs_action_source.cpp:110(galera::GcsActionSource::dispatch(void*, gcs_action const&, bool&))[0x7fb00a0ed192]
      src/gcs_action_source.cpp:29(galera::GcsActionSource::process(void*, bool&))[0x7fb00a0ed4a1]
      src/replicator_smm.cpp:390(galera::ReplicatorSMM::async_recv(void*))[0x7fb00a113100]
      src/wsrep_provider.cpp:263(galera_recv)[0x7fb00a128528]
      /usr/sbin/mariadbd(_ZN5wsrep18wsrep_provider_v2611run_applierEPNS_21high_priority_serviceE+0xe)[0x55ead1fd782e]
      /usr/sbin/mariadbd(+0xbe4333)[0x55ead1c6c333]
      /usr/sbin/mariadbd(_Z15start_wsrep_THDPv+0x2cf)[0x55ead1c5e60f]
      /usr/sbin/mariadbd(+0xb695da)[0x55ead1bf15da]
      pthread_create.c:0(start_thread)[0x7fb00df932de]
      :0(_GI__clone)[0x7fb00be00e83]

      Trying to get some variables.
      Some pointers may be invalid and cause the dump to abort.
      Query (0x7faf52d1b7c3): INSERT INTO poller_output (local_data_id, rrd_name, time, output) VALUES (63018,'unavail_slots','2020-12-11 13:45:04','0'),(194090,'cpu_time','2020-12-11 13:45:04','0'),(194090,'run_time','2020-12-11 13:45:04','0'),(259882,'runJOBS','2020-12-11 13:45:04','0'),(63786,'cpuUtil','2020-12-11 13:45:04','2.05'),(63786,'slotUtil','2020-12-11 13:45:04','1.8'),(63786,'memSlotUtil','2020-12-11 13:45:04','28.571428571428573'),(194858,'cpu_time','2020-12-11 13:45:04','0'),(194858,'run_time','2020-12-11 13:45:04','0'),(260650,'efficiency','2020-12-11 13:45:04','0'),(195626,'cpu_time','2020-12-11 13:45:04','0'),(195626,'run_time','2020-12-11 13:45:04','0'),(261418,'avg_swap','2020-12-11 13:45:04','0'),(261418,'max_swap','2020-12-11 13:45:04','0'),(65322,'cpuUtil','2020-12-11 13:45:04','28.300000000000004'),(65322,'slotUtil','2020-12-11 13:45:04','72.3'),(65322,'memSlotUtil','2020-12-11 13:45:04','82.14285714285714'),(196394,'cpu_time','2020-12-11 13:45:04','0'),(196394,'run_time','2020-12-11 13:45:04','0'),(262187,'total_cpu','2020-12-11 13:45:04','0'),(196907,'cpu_time','2020-12-11 13:45:04','0'),(196907,'run_time','2020-12-11 13:45:04','0'),(262699,'numRUN','2020-12-11 13:45:04','0'),(197675,'cpu_time','2020-12-11 13:45:04','560.928284'),(197675,'run_time','2020-12-11 13:45:04','9391'),(132395,'numRUN','2020-12-11 13:45:04','0'),(132395,'numDONE','2020-12-11 13:45:04','0'),(132395,'numEXIT','2020-12-11 13:45:04','0'),(132395,'numJobs','2020-12-11 13:45:04','0'),(132395,'numPEND','2020-12-11 13:45:04','0'),(132395,'numSUSP','2020-12-11 13:45:04','0'),(132395,'numSTARTED','2020-12-11 13:45:04','0'),(132395,'numSUBMITTED','2020-12-11 13:45:04','0'),(198443,'cpu_time','2020-12-11 13:45:04','10714458'),(198443,'run_time','2020-12-11 13:45:04','16870707'),(133163,'numRUN','2020-12-11 13:45:04','1'),(133163,'numDONE','2020-12-11 13:45:04','0'),(133163,'numEXIT','2020-12-11 13:45:04','0'),(133163,'numJobs','2020-12-11 13:45:04','1'),(133163,'numPEND','2020-12-11 13:45:04','0'),(133163,'numSUSP','2020-12-11 13:45:04','0'),(133163,'numSTARTED','2020-12-11 13:45:04','0'),(133163,'numSUBMITTED','2020-12-11 13:45:04','0'),(199211,'cpu_time','2020-12-11 13:45:04','0'),(199211,'run_time','2020-12-11 13:45:04','0'),(133931,'numRUN','2020-12-11 13:45:04','114'),(133931,'numDONE','2020-12-11 13:45:04','0'),(133931,'numEXIT','2020-12-11 13:45:04','0'),(133931,'numJobs','2020-12-11 13:45:04','114'),(133931,'numPEND','2020-12-11 13:45:04','0'),(133931,'numSUSP','2020-12-11 13:45:04','0'),(133931,'numSTARTED','2020-12-11 13:45:04','0'),(133931,'numSUBMITTED','2020-12-11 13:45:04','0'),(199979,'cpu_time','2020-12-11 13:45:04','0'),(199979,'run_time','2020-12-11 13:45:04','0'),(69163,'cpuUtil','2020-12-11 13:45:04','2.9312500000000004'),(69163,'slotUtil','2020-12-11 13:45:04','30.85625'),(69163,'memSlotUtil','2020-12-11 13:45:04','33.984375'),(134699,'numRUN','2020-12-11 13:45:04','535'),(134699,'numDONE','2020-12-11 13:45:04','0'),(134699,'numEXIT','2020-12-11 13:45:04','0'),(134699,'numJobs','2020-12-11 13:45:04','535'),(134699,'numPEND','2020-12-11 13:45:04','0'),(134699,'numSUSP','2020-12-11 13:45:04','0'),(134699,'numSTARTED','2020-12-11 13:45:04','0'),(134699,'numSUBMITTED','2020-12-11 13:45:04','0'),(200747,'cpu_time','2020-12-11 13:45:04','164179.25'),(200747,'run_time','2020-12-11 13:45:04','6833312'),(135467,'efficiency','2020-12-11 13:45:04','0'),(201515,'cpu_time','2020-12-11 13:45:04','0'),(201515,'run_time','2020-12-11 13:45:04','0'),(136235,'efficiency','2020-12-11 13:45:04','0'),(202283,'run_jobs','2020-12-11 13:45:04','0'),(71467,'numRUN','2020-12-11 13:45:04','10'),(71467,'numPEND','2020-12-11 13:45:04','0'),(71467,'numSSUSP','2020-12-11 13:45:04','0'),(71467,'numUSUSP','2020-12-11 13:45:04','0'),(71467,'numRESERVE','2020-12-11 13:45:04','0'),(71467,'numStartJobs','2020-12-11 13:45:04','10'),(137003,'efficiency','2020-12-11 13:45:04','0'),(203051,'run_jobs','2020-12-11 13:45:04','2'),(137771,'efficiency','2020-12-11 13:45:04','0'),(7211,'io','2020-12-11 13:45:04','3550.005660230799'),(7211,'pg','2020-12-11 13:45:04','4.03241376878477'),(203819,'run_jobs','2020-12-11 13:45:04','0'),(138539,'efficiency','2020-12-11 13:45:04','0'),(204587,'run_jobs','2020-12-11 13:45:04','0'),(139307,'efficiency','2020-12-11 13:45:04','0'),(205099,'run_jobs','2020-12-11 13:45:04','0'),(205355,'run_jobs','2020-12-11 13:45:04','0'),(140075,'efficiency','2020-12-11 13:45:04','0'),(9259,'io','2020-12-11 13:45:04','437.2312297821045'),(9259,'pg','2020-12-11 13:45:04','0.03515225008595735'),(206123,'run_jobs','2020-12-11 13:45:04','0'),(140843,'avg_mem','2020-12-11 13:45:04','0'),(140843,'max_mem','2020-12-11 13:45:04','0'),(10027,'io','2020-12-11 13:45:04','947.0726960897446'),(10027,'pg','2020-12-11 13:45:04','6.85328504053723'),(206891,'run_jobs','2020-12-11 13:45:04','31'),(141611,'avg_mem','2020-12-11 13:45:04','19408552'),(141611,'max_mem','2020-12-11 13:45:04','137808616'),(207659,'run_jobs','2020-12-11 13:45:04','0'),(142379,'avg_mem','2020-12-11 13:45:04','0'),(142379,'max_mem','2020-12-11 13:45:04','0'),(11819,'io','2020-12-11 13:45:04','2607.035222887993'),(11819,'pg','2020-12-11 13:45:04','85.71284288421403'),(208427,'run_jobs','2020-12-11 13:45:04','0'),(143147,'avg_mem','2020-12-11 13:45:04','0'),(143147,'max_mem','2020-12-11 13:45:04','0'),(209195,'run_jobs','2020-12-11 13:45:04','0'),(143915,'avg_mem','2020-12-11 13:45:04','0'),(143915,'max_mem','2020-12-11 13:45:04','0'),(78891,'total_cpu','2020-12-11 13:45:04','25554151'),(209963,'run_jobs','2020-12-11 13:45:04','0'),(79147,'total_cpu','2020-12-11 13:45:04','46251'),(144683,'avg_mem','2020-12-11 13:45:04','0'),(144683,'max_mem','2020-12-11 13:45:04','0'),(210731,'run_jobs','2020-12-11 13:45:04','0'),(145451,'avg_mem','2020-12-11 13:45:04','12116208'),(145451,'max_mem','2020-12-11 13:45:04','12116208'),(211499,'run_slots','2020-12-11 13:45:04','0'),(146219,'numPEND','2020-12-11 13:45:04','0'),(15659,'load','2020-12-11 13:45:04','4941.860536068678'),(15659,'capacity','2020-12-11 13:45:04','41472'),(212267,'run_slots','2020-12-11 13:45:04','0'),(81451,'numRUN','2020-12-11 13:45:04','9'),(81451,'numDONE','2020-12-11 13:45:04','0'),(81451,'numEXIT','2020-12-11 13:45:04','0'),(81451,'numJobs','2020-12-11 13:45:04','9'),(81451,'numPEND','2020-12-11 13:45:04','0'),(81451,'numSUSP','2020-12-11 13:45:04','0'),(81451,'numSTARTED','2020-12-11 13:45:04','0'),(81451,'numSUBMITTED','2020-12-11 13:45:04','0'),(146987,'numPEND','2020-12-11 13:45:04','0'),(213035,'run_slots','2020-12-11 13:45:04','0'),(147755,'numPEND','2020-12-11 13:45:04','0'),(82475,'numRUN','2020-12-11 13:45:04','311'),(82475,'numDONE','2020-12-11 13:45:04','1'),(82475,'numEXIT','2020-12-11 13:45:04','0'),(82475,'numJobs','2020-12-11 13:45:04','311'),(82475,'numPEND','2020-12-11 13:45:04','0'),(82475,'numSUSP','2020-12-11 13:45:04','0'),(82475,'numSTARTED','2020-12-11 13:45:04','0'),(82475,'numSUBMITTED','2020-12-11 13:45:04','0'),(17195,'load','2020-12-11 13:45:04','1506.8638954991475'),(17195,'capacity','2020-12-11 13:45:04','73024'),(213803,'run_slots','2020-12-11 13:45:04','0'),(148523,'numPEND','2020-12-11 13:45:04','0'),(214571,'run_slots','2020-12-11 13:45:04','0'),(149291,'numPEND','2020-12-11 13:45:04','0'),(18731,'ok_slots','2020-12-11 13:45:04','448'),(18731,'total_jobs','2020-12-11 13:45:04','112'),(215339,'run_slots','2020-12-11 13:45:04','0'),(150059,'numPEND','2020-12-11 13:45:04','0'),(216107,'run_slots','2020-12-11 13:45:04','0'),(150827,'numPEND','2020-12-11 13:45:04','79'),(216875,'run_slots','2020-12-11 13:45:04','0'),(20523,'ok_slots','2020-12-11 13:45:04','160'),(20523,'total_jobs','2020-12-11 13:45:04','152'),(151595,'numPEND','2020-12-11 13:45:04','0'),(86571,'numRUN','2020-12-11 13:45:04','0'),(217643,'run_slots','2020-12-11 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      Connection ID (thread ID): 6
      Status: NOT_KILLED

      Optimizer switch: index_merge=on,index_merge_union=on,index_merge_sort_union=on,index_merge_intersection=on,index_merge_sort_intersection=off,engine_condition_pushdown=off,index_condition_pushdown=on,derived_merge=on,derived_with_keys=on,firstmatch=on,loosescan=on,materialization=on,in_to_exists=on,semijoin=on,partial_match_rowid_merge=on,partial_match_table_scan=on,subquery_cache=on,mrr=off,mrr_cost_based=off,mrr_sort_keys=off,outer_join_with_cache=on,semijoin_with_cache=on,join_cache_incremental=on,join_cache_hashed=on,join_cache_bka=on,optimize_join_buffer_size=on,table_elimination=on,extended_keys=on,exists_to_in=on,orderby_uses_equalities=on,condition_pushdown_for_derived=on,split_materialized=on,condition_pushdown_for_subquery=on,rowid_filter=on,condition_pushdown_from_having=on,not_null_range_scan=off

      The manual page at https://mariadb.com/kb/en/how-to-produce-a-full-stack-trace-for-mysqld/ contains
      information that should help you find out what is causing the crash.
      Writing a core file...
      Working directory at /data/mysql
      Resource Limits:
      Limit Soft Limit Hard Limit Units
      Max cpu time unlimited unlimited seconds
      Max file size unlimited unlimited bytes
      Max data size unlimited unlimited bytes
      Max stack size 8388608 unlimited bytes
      Max core file size unlimited unlimited bytes
      Max resident set unlimited unlimited bytes
      Max processes 6186605 6186605 processes
      Max open files 130000 130000 files
      Max locked memory 130000 130000 bytes
      Max address space unlimited unlimited bytes
      Max file locks unlimited unlimited locks
      Max pending signals 6186605 6186605 signals
      Max msgqueue size 819200 819200 bytes
      Max nice priority 0 0
      Max realtime priority 0 0
      Max realtime timeout unlimited unlimited us
      Core pattern: /local/mnt/crash/core.%e.%p.%h.%t

      2020-12-11 13:49:31 0 [Note] WSREP: Loading provider /usr/lib64/galera-4/libgalera_smm.so initial position: e039639e-2068-11eb-999d-464a96eae14a:54648913
      2020-12-11 13:49:31 0 [Note] WSREP: wsrep_load(): loading provider library '/usr/lib64/galera-4/libgalera_smm.so'
      2020-12-11 13:49:31 0 [Note] WSREP: wsrep_load(): Galera 26.4.6(r1d8d67c8) by Codership Oy <info@codership.com> loaded successfully.
      2020-12-11 13:49:31 0 [Note] WSREP: CRC-32C: using 64-bit x86 acceleration.
      2020-12-11 13:49:31 0 [Note] WSREP: Found saved state: e039639e-2068-11eb-999d-464a96eae14a:-1, safe_to_bootstrap: 0
      2020-12-11 13:49:31 0 [Note] WSREP: GCache DEBUG: opened preamble:
      Version: 2
      UUID: e039639e-2068-11eb-999d-464a96eae14a
      Seqno: -1 - -1
      Offset: -1
      Synced: 0
      2020-12-11 13:49:31 0 [Note] WSREP: Recovering GCache ring buffer: version: 2, UUID: e039639e-2068-11eb-999d-464a96eae14a, offset: -1
      2020-12-11 13:49:31 0 [Note] WSREP: GCache::RingBuffer initial scan... 0.0% ( 0/10737418264 bytes) complete.

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              Assignee:
              Unassigned
              Reporter:
              TheWitness Larry Adams
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                Updated:
                Resolved:

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