TY - GEN

T1 - Shortest unique palindromic substring queries on run-length encoded strings

AU - Watanabe, Kiichi

AU - Nakashima, Yuto

AU - Inenaga, Shunsuke

AU - Bannai, Hideo

AU - Takeda, Masayuki

N1 - Funding Information:
Acknowledgments. This work was supported by JSPS KAKENHI Grant Numbers JP18K18002 (YN), JP17H01697 (SI), JP16H02783 (HB), and JP18H04098 (MT).

PY - 2019

Y1 - 2019

N2 - For a string S, a palindromic substring S[i.j] is said to be a shortest unique palindromic substring (SUPS) for an interval [s, t] in S, if S[i.j] occurs exactly once in S, the interval [i, j] contains [s, t], and every palindromic substring containing [s, t] which is shorter than S[i.j] occurs at least twice in S. In this paper, we study the problem of answering SUPS queries on run-length encoded strings. We show how to preprocess a given run-length encoded string RLES of size m in O(m) space and O(mlog σRLES + m√log m/log logm) time so that all SUPSs for any subsequent query interval can be answered in O(√log m/log logm+ α) time, where α is the number of outputs, and σRLES is the number of distinct runs of RLES.

AB - For a string S, a palindromic substring S[i.j] is said to be a shortest unique palindromic substring (SUPS) for an interval [s, t] in S, if S[i.j] occurs exactly once in S, the interval [i, j] contains [s, t], and every palindromic substring containing [s, t] which is shorter than S[i.j] occurs at least twice in S. In this paper, we study the problem of answering SUPS queries on run-length encoded strings. We show how to preprocess a given run-length encoded string RLES of size m in O(m) space and O(mlog σRLES + m√log m/log logm) time so that all SUPSs for any subsequent query interval can be answered in O(√log m/log logm+ α) time, where α is the number of outputs, and σRLES is the number of distinct runs of RLES.

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U2 - 10.1007/978-3-030-25005-8_35

DO - 10.1007/978-3-030-25005-8_35

M3 - Conference contribution

AN - SCOPUS:85069747956

SN - 9783030250041

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 430

EP - 441

BT - Combinatorial Algorithms - 30th International Workshop, IWOCA 2019, Proceedings

A2 - Colbourn, Charles J.

A2 - Grossi, Roberto

A2 - Pisanti, Nadia

PB - Springer Verlag

T2 - 30th International Workshop on Combinatorial Algorithms, IWOCA 2019

Y2 - 23 July 2019 through 25 July 2019

ER -