From mariadb log:
2016-04-14 4:58:03 140116923128496 [ERROR] Table ./csm/history_digital185410 has a primary key in InnoDB data dictionary, but not in MySQL!
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2016-04-14 4:58:03 140116923128496 [ERROR] InnoDB: Table csm/history_digital185410 contains 2 indexes inside InnoDB, which is different from the number of indexes 1 defined in the MySQL
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2016-04-14 4:58:03 140116923128496 [Note] InnoDB: Online DDL : Start
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2016-04-14 4:58:03 140116923128496 [Note] InnoDB: Online DDL : Start reading clustered index of the table and create temporary files
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160414 4:58:03 [ERROR] mysqld got signal 11 ;
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This could be because you hit a bug. It is also possible that this binary
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or one of the libraries it was linked against is corrupt, improperly built,
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or misconfigured. This error can also be caused by malfunctioning hardware.
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The database crashed many times during altering tables.
There is over 400000 small tables in this database, and I wish to alter about 220000 tables.
RAM memory in system: 4GB.
Storage used for database: about 31GB
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