Some records are not updated on storage engine (innodb) but exist on binary log

I have a nodejs application that build a query to update records on my table.

In the binary logs there is a transaction that occurred but in the storage engine (innodb) it did not update.

for example in the binary log, the transaction is like this. but the id with 2 and 3 are not updated in the storage engine(innodb).

BEGIN
UPDATE my_table SET status = 1, updated_at = NOW() WHERE id = 1
UPDATE my_table SET status = 1, updated_at = NOW() WHERE id = 2
UPDATE my_table SET status = 1, updated_at = NOW() WHERE id = 3
UPDATE my_table SET status = 1, updated_at = NOW() WHERE id = 4
UPDATE my_table SET status = 1, updated_at = NOW() WHERE id = 5
COMMIT