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  1. MariaDB Server
  2. MDEV-21722

Mariabackup - Preparing incremental backup crash with mysqld got signal 6

Details

    • Bug
    • Status: Closed (View Workflow)
    • Major
    • Resolution: Incomplete
    • 10.4.10
    • N/A
    • Backup
    • Debian 10 = OS

    Description

      InnoDB: Failing assertion: free + TRX_UNDO_LOG_XA_HDR_SIZE < srv_page_size - 100
      InnoDB: We intentionally generate a memory trap.
      InnoDB: Submit a detailed bug report to https://jira.mariadb.org/
      InnoDB: If you get repeated assertion failures or crashes, even
      InnoDB: immediately after the mysqld startup, there may be
      InnoDB: corruption in the InnoDB tablespace. Please refer to
      InnoDB: https://mariadb.com/kb/en/library/innodb-recovery-modes/
      InnoDB: about forcing recovery.
      200213 10:23:21 [ERROR] mysqld got signal 6 ;
      This could be because you hit a bug. It is also possible that this binary
      or one of the libraries it was linked against is corrupt, improperly built,
      or misconfigured. This error can also be caused by malfunctioning hardware.

      To report this bug, see https://mariadb.com/kb/en/reporting-bugs

      We will try our best to scrape up some info that will hopefully help
      diagnose the problem, but since we have already crashed,
      something is definitely wrong and this may fail.

      Server version: 10.4.10-MariaDB-1:10.4.10+maria~buster
      key_buffer_size=0
      read_buffer_size=131072
      max_used_connections=0
      max_threads=1
      thread_count=0
      It is possible that mysqld could use up to
      key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 5917 K bytes of memory
      Hope that's ok; if not, decrease some variables in the equation.

      Thread pointer: 0x0
      Attempting backtrace. You can use the following information to find out
      where mysqld died. If you see no messages after this, something went
      terribly wrong...
      stack_bottom = 0x0 thread_stack 0x49000
      mariabackup(my_print_stacktrace+0x2e)[0x563c2ed0971e]
      mariabackup(handle_fatal_signal+0x54d)[0x563c2e864aad]
      /lib/x86_64-linux-gnu/libpthread.so.0(+0x12730)[0x7f708c43b730]
      /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x10b)[0x7f708b8837bb]
      /lib/x86_64-linux-gnu/libc.so.6(abort+0x121)[0x7f708b86e535]
      mariabackup(+0x5b2371)[0x563c2e4e1371]
      mariabackup(+0x5b1f98)[0x563c2e4e0f98]
      mariabackup(+0xc21ef0)[0x563c2eb50ef0]
      mariabackup(+0xb5c9b5)[0x563c2ea8b9b5]
      mariabackup(+0xb5d59b)[0x563c2ea8c59b]
      mariabackup(+0x595449)[0x563c2e4c4449]
      mariabackup(+0x578a62)[0x563c2e4a7a62]
      mariabackup(+0xab70dc)[0x563c2e9e60dc]
      mariabackup(+0xbf3c20)[0x563c2eb22c20]
      /lib/x86_64-linux-gnu/libpthread.so.0(+0x7fa3)[0x7f708c430fa3]
      /lib/x86_64-linux-gnu/libc.so.6(clone+0x3f)[0x7f708b9454cf]
      The manual page at http://dev.mysql.com/doc/mysql/en/crashing.html contains
      information that should help you find out what is causing the crash.
      Writing a core file...
      Working directory at /path/to/backup
      Resource Limits:
      Fatal signal 11 while backtracing
      Segmentation fault

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            This looks like undo log header page corruption.
            We would need a reproducible test case for this.

            Please note that a mariabackup --prepare step will be needed before the server can be started up. The incremental backup writes some additional .delta files that are ignored by the normal InnoDB crash recovery.

            marko Marko Mäkelä added a comment - This looks like undo log header page corruption. We would need a reproducible test case for this. Please note that a mariabackup --prepare step will be needed before the server can be started up. The incremental backup writes some additional .delta files that are ignored by the normal InnoDB crash recovery.
            Wilson Wilson added a comment -

            Hi Marko Makela i encounter this issue when i prepare my incremental backup to my full backup, yes the mariadb service was stop.. Before i didn't encounter this issue..

            Just a quick question because i'm a newbie on mariadb, is there a way of preparing multiple incremental backup on my fullbackup in just one session??

            Wilson Wilson added a comment - Hi Marko Makela i encounter this issue when i prepare my incremental backup to my full backup, yes the mariadb service was stop.. Before i didn't encounter this issue.. Just a quick question because i'm a newbie on mariadb, is there a way of preparing multiple incremental backup on my fullbackup in just one session??
            somanos Somanos Sar added a comment - - edited

            Hi all,
            I've just tumbled upon the same issue.
            10.4.8-MariaDB debian-linux-gnu (x86_64)
            ...
            [00] 2020-06-03 17:51:49 mariabackup: Generating a list of tablespaces
            2020-06-03 17:51:49 0 [Warning] InnoDB: Allocated tablespace ID 972953 for 377eafb4377eafb6/FTS_00000000000ed89d_00000000001ca9e9_INDEX_6, old maximum was 0
            2020-06-03 17:51:49 0 [ERROR] InnoDB: Operating system error number 24 in a file operation.
            2020-06-03 17:51:49 0 [ERROR] InnoDB: Error number 24 means 'Too many open files'
            2020-06-03 17:51:49 0 [Note] InnoDB: Some operating system error numbers are described at https://mariadb.com/kb/en/library/operating-system-error-codes/
            2020-06-03 17:51:49 0 [ERROR] InnoDB: File ./a_1222c6951222c696/_src_temp_media.ibd: 'open' returned OS error 224.
            2020-06-03 17:51:49 0x7ff2c93797c0 InnoDB: Assertion failure in file /home/buildbot/buildbot/build/mariadb-10.4.8/storage/innobase/fil/fil0fil.cc line 576

            ...
            Is there any updates ?

            My instance contains large amount of schemas...

            Thanks

            somanos Somanos Sar added a comment - - edited Hi all, I've just tumbled upon the same issue. 10.4.8-MariaDB debian-linux-gnu (x86_64) ... [00] 2020-06-03 17:51:49 mariabackup: Generating a list of tablespaces 2020-06-03 17:51:49 0 [Warning] InnoDB: Allocated tablespace ID 972953 for 377eafb4377eafb6/FTS_00000000000ed89d_00000000001ca9e9_INDEX_6, old maximum was 0 2020-06-03 17:51:49 0 [ERROR] InnoDB: Operating system error number 24 in a file operation. 2020-06-03 17:51:49 0 [ERROR] InnoDB: Error number 24 means 'Too many open files' 2020-06-03 17:51:49 0 [Note] InnoDB: Some operating system error numbers are described at https://mariadb.com/kb/en/library/operating-system-error-codes/ 2020-06-03 17:51:49 0 [ERROR] InnoDB: File ./a_1222c6951222c696/_src_temp_media.ibd: 'open' returned OS error 224. 2020-06-03 17:51:49 0x7ff2c93797c0 InnoDB: Assertion failure in file /home/buildbot/buildbot/build/mariadb-10.4.8/storage/innobase/fil/fil0fil.cc line 576 ... Is there any updates ? My instance contains large amount of schemas... Thanks
            somanos Somanos Sar added a comment -

            In case some others are facing the same issue, I found some hints from this link
            https://mariadb.com/kb/en/mariabackup-overview/#too-many-open-files and end up with this conf, which works for me. Btw, 65535 wasn't enough for me... needed to make 10 fold
            [mariabackup]
            open_files_limit=655350
            use-memory=1048576
            max_connections=1

            somanos Somanos Sar added a comment - In case some others are facing the same issue, I found some hints from this link https://mariadb.com/kb/en/mariabackup-overview/#too-many-open-files and end up with this conf, which works for me. Btw, 65535 wasn't enough for me... needed to make 10 fold [mariabackup] open_files_limit=655350 use-memory=1048576 max_connections=1
            marko Marko Mäkelä added a comment - - edited

            The problem should be caused by a DB_ROLL_PTR system column pointing to something that is no longer the start of a valid undo log record. In other words, the clustered index leaf page and the undo log pages of the transaction management are not corresponding to the same logical point of time.

            MDEV-20755 might explain this. If the table was being rebuilt by ALTER TABLE using the default setting innodb_log_optimize_ddl=ON, then incremental backup or restore could make an incorrect copy of the data file.

            I am not entirely convinced of this hypothesis, and I did not analyze what exactly is broken in the incremental backup or restore.

            marko Marko Mäkelä added a comment - - edited The problem should be caused by a DB_ROLL_PTR system column pointing to something that is no longer the start of a valid undo log record. In other words, the clustered index leaf page and the undo log pages of the transaction management are not corresponding to the same logical point of time. MDEV-20755 might explain this. If the table was being rebuilt by ALTER TABLE using the default setting innodb_log_optimize_ddl=ON , then incremental backup or restore could make an incorrect copy of the data file. I am not entirely convinced of this hypothesis, and I did not analyze what exactly is broken in the incremental backup or restore.

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              Wilson Wilson
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                Updated:
                Resolved:

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