Details
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Bug
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Status: Closed (View Workflow)
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Critical
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Resolution: Fixed
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5.5.42, 10.0.16
Description
CREATE TABLE `t1` (
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`id` int(10) unsigned NOT NULL AUTO_INCREMENT,
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`cm` mediumint(8) unsigned NOT NULL,
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`md` tinyint(4) NOT NULL,
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`pid` int(10) unsigned NOT NULL,
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`npid` int(10) unsigned DEFAULT NULL,
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`cb` int(10) unsigned NOT NULL,
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PRIMARY KEY (`id`),
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UNIQUE KEY `cm` (`cm`,`md`,`pid`,`npid`)
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) ENGINE=InnoDB AUTO_INCREMENT=1 DEFAULT CHARSET=latin1;
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First the table is not that large (1.1GB) and this number of rows:
select count(*) from t1;
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+----------+
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| count(*) |
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+----------+
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| 13146095 |
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+----------+
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1 row in set (2.82 sec)
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The table is 1GB and the server has 192 GB of RAM.
# ls -lh t1.ibd
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-rw-rw---- 1 1.1G Feb 3 13:58 t1.ibd
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This table exists on two different machines (lets call them machine1 and machine2). These machines are on two different replication streams and this causes that table contents on these machines may differ. Periodically, customer executes Percona tool pt-sync-table (http://www.percona.com/doc/percona-toolkit/2.2/pt-table-sync.html). On master this produces following kind of transactions (single transaction containing lot of statements):
---TRANSACTION 500973435, ACTIVE (PREPARED) 23019 sec
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308870 lock struct(s), heap size 45790760, 49395321 row lock(s), undo log entries 25930772
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MySQL thread id 47698974, OS thread handle 0x7f957722e700, query id 2253075967
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TABLE LOCK table `test`.`t1` trx id 500973435 lock mode IX
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RECORD LOCKS space id 15988 page no 65789 n bits 88 index `PRIMARY` of table `test`.`t1` trx id 500973435 lock_mode X
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RECORD LOCKS space id 15988 page no 3604 n bits 504 index `cm` of table `test`.`t1` trx id 500973435 lock_mode X
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RECORD LOCKS space id 15988 page no 4120 n bits 456 index `PRIMARY` of table `test`.`t1` trx id 500973435 lock_mode X locks rec but not gap
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RECORD LOCKS space id 15988 page no 3604 n bits 504 index `cm` of table `test`.`t1` trx id 500973435 lock_mode X locks gap before rec
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RECORD LOCKS space id 15988 page no 3605 n bits 512 index `cm` of table `test`.`t1` trx id 500973435 lock_mode X
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RECORD LOCKS space id 15988 page no 4119 n bits 456 index `PRIMARY` of table `test`.`t1` trx id 500973435 lock_mode X locks rec but not gap
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RECORD LOCKS space id 15988 page no 3605 n bits 520 index `cm` of table `test`.`t1` trx id 500973435 lock_mode X locks gap before rec
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RECORD LOCKS space id 15988 page no 3603 n bits 752 index `cm` of table `test`.`t1` trx id 500973435 lock_mode X
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RECORD LOCKS space id 15988 page no 3603 n bits 752 index `cm` of table `test`.`t1` trx id 500973435 lock_mode X locks gap before rec
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TOO MANY LOCKS PRINTED FOR THIS TRX: SUPPRESSING FURTHER PRINTS
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On slave this same transaction is ~10x slower:
---TRANSACTION 455244311, ACTIVE 246994 sec setting auto-inc lock
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mysql tables in use 1, locked 1
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310972 lock struct(s), heap size 46888488, 50033767 row lock(s), undo log entries 25929883
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MySQL thread id 191, OS thread handle 0x7fa9bcc49700, query id 15186089 executing
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TABLE LOCK table `test`.`t1` trx id 455244311 lock mode IX
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RECORD LOCKS space id 15974 page no 4120 n bits 456 index `PRIMARY` of table `test`.`t1` trx id 455244311 lock_mode X locks rec but not gap
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RECORD LOCKS space id 15974 page no 3653 n bits 744 index `cm` of table `test`.`t1` trx id 455244311 lock_mode X locks rec but not gap
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RECORD LOCKS space id 15974 page no 3653 n bits 744 index `cm` of table `test`.`t1` trx id 455244311 lock mode S
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RECORD LOCKS space id 15974 page no 3653 n bits 744 index `cm` of table `test`.`t1` trx id 455244311 lock mode S locks gap before rec
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RECORD LOCKS space id 15974 page no 4119 n bits 456 index `PRIMARY` of table `test`.`t1` trx id 455244311 lock_mode X locks rec but not gap
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RECORD LOCKS space id 15974 page no 3654 n bits 776 index `cm` of table `test`.`t1` trx id 455244311 lock_mode X locks rec but not gap
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RECORD LOCKS space id 15974 page no 3654 n bits 776 index `cm` of table `test`.`t1` trx id 455244311 lock mode S
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RECORD LOCKS space id 15974 page no 3654 n bits 776 index `cm` of table `test`.`t1` trx id 455244311 lock mode S locks gap before rec
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RECORD LOCKS space id 15974 page no 53911 n bits 792 index `cm` of table `test`.`t1` trx id 455244311 lock_mode X locks rec but not gap
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TOO MANY LOCKS PRINTED FOR THIS TRX: SUPPRESSING FURTHER PRINTS
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So runtime: 246994 = ~ 2 days and 21 hours. Again vs the original ~ 7 hours (on the master) this behaviour is really not good. So the question is: why it takes so much longer and what can be done about this to prevent it?
Server was not I/O bound. It was 100% cpu bound with a single thread pegged at 100%
Number of different statements on that one big transaction:
ls -la binlog.000001 # binlog of the large transaction we saw
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[mysqlbinlog -vvv --start-position=4 binlog.000001 | grep -c '^### DELETE FROM `test`.`t1`'
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11801095
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[mysqlbinlog -vvv --start-position=4 binlog.000001 | grep -c '^### UPDATE `test`.`t1`'
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983605
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mysqlbinlog -vvv --start-position=4 binlog.000001 | grep -c '^### INSERT INTO `test`.`t1`'
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12162467
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Lets try to repeat first using same sane defaults. From InnoDB point of view transaction should be executed exactly similar way as in master if the set of actual statements are exactly the same. If in RBR some statement is replicated differently then we have different case. Here is what we understant to this point of time. We have two machines A and B, both contain the same table but table contents differ. Thus in machine A master executes selects (to find out the rows that differ and how), inserts, replaces, deletes to modify table rows to match table in B. This creates a big transaction that takes ~7h on master, on transaction commit master writes ~1G binlog that is then transfered to slave for execution. For some reason this execution takes 10x time compared with master. I did debug the slave, and there was basically only one SQL-thread doing something, executing this one big transaction, statement by statement.